Configuring Parallel Environments. ... Shared memory parallel programs on multiple slots ... For more details about these allocation rules, see the sge_pe(5) ... SGE cannot run in PE "ncpus" because it only offers 0 slots Memory was not a problem and I constantly get the cannot run in PE "ncpus" because it only offers ... allocation_rule $pe_slots ... slots overall? I don't run SGE in ... Explicitly check that the SGE PE is appropriate ...
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The original included files for the PVM integration offer only a loose integration of PVM into SGE. This means, that the necessary daemons (which build up the PVM), will neither be under control of SGE, nor that all files on the slave nodes … Loose and tight LAM/MPI Integration in SGE Additional information on the SGE parallel environment is available from the "sge_pe" man pages (make sure the SGE man pages are defined in your $Manpath). Tight Mpich2 Integration in Grid Engine Additional information about queues and parallel interfaces you can get from the man pages "queue_conf" and "sge_pe" of SGE (make sure the SGE man pages are defined in your $Manpath). SGE Integration - distmake
Sun Grid Engine - Version 6.0 to 6.2 [Release 6.0]: Grid Engine does not schedule parallel job, "cannot run in PE because it only offers 0 slots"
That parallel environment isn't what you want. The allocation rule lets the slots span multiple instances (as you can see from the scheduled task).
IZ2332: Enhance PE slot allocation to support multiples of N
Open Grid Scheduler / List gridscheduler-users Archives On 19 January 2012 16:07, Arif Ali
Create a special parallel environment (qconf -sp mpich) and change allocation_rule possible values are: (see sge_pe man page for complete list) Don't forget to modify each queue to add the new PE to the PE list.
pe_name shm slots 999 user_lists NONE xuser_lists NONE start_proc_args /bin/truebin/true allocation_rule $pe_slots control_slaves FALSE job_is_first_task FALSE urgency_ slots minsge.pe = [YOUR_PE_NAME] # shm by default sge.mem = [MAX_MEMORY_TYPE] # h_vmem by... Wesley @BerryLab: [SGE] Parallel Environment | … allocation rule.
How to configure Grid Engine parallel environments in 4 ... pe_name openmpi_ib slots 99999 user_lists ... start_proc_args /cm/shared/apps/sge/current/mpi/openmpi/startopenmpi.sh \ ... allocation_rule $fill_up Integrating Intel MPI Library with Sun Grid Engine | Intel ...